Software Listing

We maintain and can install a wide variety of software in our computing environments to meet your research needs.  Please note the expectation is that the researcher is already proficient in its use.

Research Software Listings
Software Version Application
BCFtools 1.2 Bioinformatics
BLAST+ 2.2.30 Bioinformatics
Bowtie 1.1.1 Bioinformatics
Bowtie 2 2.2.5 Bioinformatics
BWA 0.7.12 Bioinformatics
Crystal14 1.0.3 Quantum chemistry, Molecular mechanics
Cufflinks 2.2.1 Bioinformatics
FastQC 0.11.3 Bioinformatics
FASTX-Toolkit 0.0.13 Bioinformatics
GAMESS-US 2014 Dec 5 Quantum chemistry, Molecular mechanics
Gaussian 09 Revision D.01 Quantum chemistry, Molecular mechanics
HTSlib 1.2.1 Bioinformatics
OrthoDB 1.6 Bioinformatics
Proteinortho 5.11 Bioinformatics
Samtools 1.2 Bioinformatics
Trimmomatic 0.27 Bioinformatics
TrinityRNASeq 2.0.6 Bioinformatics