Software Listing
We maintain and can install a wide variety of software in our computing environments to meet your research needs. Please note the expectation is that the researcher is already proficient in its use.
Below is a sample of applications and tools used within the research environments.
| Software | Application |
|---|---|
| BCFtools | Bioinformatics |
| BLAST+ | Bioinformatics |
| Blender | Graphical Rendering |
| Bowtie 2 | Bioinformatics |
| Bowtie | Bioinformatics |
| BWA | Bioinformatics |
| Crystal14 | Quantum chemistry, Molecular mechanics |
| Cufflinks | Bioinformatics |
| FastQC | Bioinformatics |
| FASTX-Toolkit | Bioinformatics |
| GAMESS-US | Quantum chemistry, Molecular mechanics |
| Gaussian | Quantum chemistry, Molecular mechanics |
| HTSlib | Bioinformatics |
| NWChem | Chemistry |
| OrthoDB | Bioinformatics |
| PhotoScan | Photogrammetry |
| Proteinortho | Bioinformatics |
| Python | Scripting / Programing |
| Reality Capture | Photogrammetry |
| Samtools | Bioinformatics |
| Tensor Flow | Machine Learning |
| Trimmomatic | Bioinformatics |
| TrinityRNASeq | Bioinformatics |